Differential effects of 40S ribosome recycling factors on reinitiation at regulatory uORFs in GCN4 mRNA are not dictated by their roles in bulk 40S recycling Communications Biology. 2024; 7(September 2024); 10832024 Jendruchová K.Gaikwad S.Poncová K.Gunišová S.Valášek L.Hinnebusch A.Zobrazit další (1) Laboratoř regulace genové exprese10.1038/s42003-024-06761-x
Stem-loop-induced ribosome queuing in the uORF2/ATF4 overlap fine-tunes stress-induced human ATF4 translational control. Cell Reports. 2024; 43(4); 1139762024 Smirnova A.Hronová V.Mohammad M.Herrmannová A.Gunišová S.Petráčková D.Halada P.Coufal .Swirski M.Rendleman J.Jendruchová K.Hatzoglou M.Beznosková P.Vogel C.Valášek L.Zobrazit další (10) Laboratoř regulace genové exprese10.1016/j.celrep.2024.113976
RIP-seq reveals RNAs that interact with RNA polymerase and primary sigma factors in bacteria Nucleic Acids Research. 2024; 52(May 8); 4604-46262024 Vaňková Hausnerová V.Shoman M.Kumar D.Schwarz M.Modrák M.Jirát Matějčková J.Mikesková E.Neva S.Herrmannová A.Šiková M.Halada P.Novotná I.Pajer J.Valášek L.Převorovský M.Krásný L.Hnilicová J.Zobrazit další (12) Laboratoř mikrobiální genetiky a genové exprese 10.1093/nar/gkae081
Cysteine tRNA acts as a stop codon readthrough-inducing tRNA in the human HEK293T cell line RNA. 2023; 29(9); 1379-13872023 Valášek L.Kučerová M.Zeman J.Beznosková P. Laboratoř regulace genové exprese10.1261/rna.079688.123
Short tRNA anticodon stem and mutant eRF1 allow stop codon reassignment Nature. 2023; 613(7965); 751-7582023 Kachale A.Pavlíková Z.Nenarokova A.Roithová A.Durante I.Miletínová P.Záhonová K.Nenarokov S.Votýpka J.Horáková E.Ross R.Yurchenko V.Beznosková P.Paris Z.Valášek L.Lukeš J.Zobrazit další (11) Laboratoř regulace genové exprese10.1038/s41586-023-06260-9
ZOMES: Cell physiology determined by PCI complexes and protein turnover Biochimica Et Biophysica Acta-Molecular Cell Research. 2023; 1870(2); 1194022023 Dubiel D.da Fonseca P.Valášek L.Schulze-Niemand E.Naumann M. Laboratoř regulace genové exprese10.1016/j.bbamcr.2022.119402
Human DUS1L catalyzes dihydrouridine modification at tRNA positions 16/17; and iDUS1L/i overexpression perturbs translation Communications Biology. 2024; 7(1); 12382024 Matsuura J.Akichika S.Wei F.Suzuki T.Yamamoto T.Watanabe Y.Valášek L.Mukasa A.Tomizawa K.Chujo T.Zobrazit další (5) Laboratoř regulace genové exprese10.1038/s42003-024-06942-8
Selective footprinting of 40S and 80S ribosome subpopulations (Sel-TCP-seq) to study translation and its control Nature Protocols. 2022; 17(10); 2139-21872022 Wagner S.Bohlen J.Herrmannová A.Jelínek J.Preiss T.Valášek L.Teleman A.Zobrazit další (2) Laboratoř regulace genové exprese10.1038/s41596-022-00708-4
eIF4G is retained on ribosomes elongating and terminating on short upstream ORFs to control reinitiation in yeast Nucleic Acids Research. 2021; 49(15); 8743-87562021 Mohammad M.Smirnova A.Gunišová S.Valášek L. Laboratoř regulace genové exprese10.1093/nar/gkab652
Increased expression of tryptophan and tyrosine tRNAs elevates stop codon readthrough of reporter systems in human cell lines Nucleic Acids Research. 2021; 49(9); 5202-52152021 Beznosková P.Bidou L.Namy O.Valášek L. Laboratoř regulace genové exprese10.1093/nar/gkab315
Structural Differences in Translation Initiation between Pathogenic Trypanosomatids and Their Mammalian Hosts Cell Reports. 2020; 33(12); 1085342020 Bochler A.Querido J.Prilepskaja T.Soufari H.Simonetti A.Del Cistia M.Kuhn L.Ribeiro A.Valášek L.Hashem Y.Zobrazit další (5) Laboratoř regulace genové exprese10.1016/j.celrep.2020.108534
Selective Translation Complex Profiling Reveals Staged Initiation and Co-translational Assembly of Initiation Factor Complexes Molecular Cell. 2020; 79(4); 546-5602020 Wagner S.Herrmannová A.Hronová V.Gunišová S.Sen N.Hannan R.Hinnebusch A.Shirokikh N.Preiss T.Valášek L.Zobrazit další (5) Laboratoř regulace genové exprese10.1016/j.molcel.2020.06.004
Adapted formaldehyde gradient cross-linking protocol implicates human eIF3d and eIF3c; k and I subunits in the 43S and 48S pre-initiation complex assembly; respectively Nucleic Acids Research. 2020; 48(4); 1969-19842020 Herrmannová A.Prilepskaja T.Wagner S.Šikrová D.Zeman J.Poncová K.Valášek L.Zobrazit další (2) Laboratoř regulace genové exprese10.1093/nar/gkz1185
uS3/Rps3 controls fidelity of translation termination and programmed stop codon readthrough in co-operation with eIF3 Nucleic Acids Research. 2019; 47(21); 11326-113432019 Poncová K.Wagner S.Jansen M.Beznosková P.Gunišová S.Herrmannová A.Zeman J.Dong J.Valášek L.Zobrazit další (4) Laboratoř regulace genové exprese10.1093/nar/gkz929
Yeast applied readthrough inducing system (YARIS): an invivo assay for the comprehensive study of translational readthrough Nucleic Acids Research. 2019; 47(12); 6339-63502019 Beznosková P.Pavlíková Z.Zeman J.Aitken C.Valášek L. Laboratoř regulace genové exprese10.1093/nar/gkz346
Binding of eIF3 in complex with eIF5 and eIF1 to the 40S ribosomal subunit is accompanied by dramatic structural changes Nucleic Acids Research. 2019; 47(15); 8282-83002019 Zeman J.Itoh Y.Kukačka Z.Rosůlek M.Kavan D.Kouba T.Jansen M.Mohammad M.Novák P.Valášek L.Zobrazit další (5) Laboratoř strukturní biologie a buněčné signalizace 10.1093/nar/gkz570
