Data-Independent Acquisition Represents a Promising Alternative for Fast Photochemical Oxidation of Proteins (FPOP) Samples Analysis 2024 Laboratoř strukturní biologie a buněčné signalizace Zákopčaník M.Kavan D.Kukačka Z.Novák P.Loginov D.Analytical Chemistry. 2024; 96(28); 11273-1127910.1021/acs.analchem.4c01084
A Novel Monoallelic ALG5 Variant Causing Late-Onset ADPKD and Tubulointerstitial Fibrosis 2024 Laboratoř strukturní biologie a buněčné signalizace Elhassan E.Kmochová T.Benson K.Fennelly N.Barešová V.Kidd K.Doyle B.Dorman A.Morrin M.Kyne N.Vyleťal P.Hartmannová H.Hodanová K.Sovová J.Mušálková D.Vrbacká A.Přistoupilová A.Živný J.Svojšová K.Radina M.Stránecký V.Loginov D.Pompach P.Novák P.Vaníčková Z.Hansíková H.Rajnochová-Bloudíčková S.Viklický O.Hůlková H.Cavalleri G.Hnizda A.Bleyer A.Kmoch S.Conlon P.Živná M.Kidney International Reports. 2024; 9(7); 2209-222610.1016/j.ekir.2024.04.031
Transferrin maintains the motility rate; ATP content; and DNA integrity of common carp spermatozoa during short-term storage 2024 Laboratoř strukturní biologie a buněčné signalizace Shaliutina-Loginova A.Loginov D.Animal Reproduction Science. 2024; 263(April 2024); 10743710.1016/j.anireprosci.2024.107437
Design of AsLOV2 domain as a carrier of light-induced dissociable FMN photosensitizer 2024 Laboratoř strukturní biologie a buněčné signalizace Felčíková K.Hovan A.Polák M.Loginov D.Holotová V.Diaz C.Kožář T.Lee O.Varhač R.Novák P.Bánó G.Sedlák E.Protein Science. 2024; 33(4); e492110.1002/pro.4921
Oxidative stress and DNA fragmentation in frozen/thawed common Carp Cyprinus carpio sperm with and without supplemental proteins 2023 Laboratoř strukturní biologie a buněčné signalizace Shaliutina-Loginova A.Loginov D.Animal Reproduction Science. 2023; 251(April 2023); 10721310.1016/j.anireprosci.2023.107213
Counterintuitive structural and functional effects due to naturally occurring mutations targeting the active site of the disease-associated NQO1 enzyme 2023 Laboratoř strukturní biologie a buněčné signalizace Pacheco-Garcia J.Anoz-Carbonell E.Loginov D.Kavan D.Salido E.Man P.Medina M.Pey A.FEBS Journal. 2023; 290(7); 1855-187310.1111/febs.16677
Experimental characterization of de novo proteins and their unevolved random-sequence counterparts 2023 Laboratoř strukturní biologie a buněčné signalizace Heames B.Buchel F.Aubel M.Tretyachenko V.Loginov D.Novák P.Lange A.Bornberg-Bauer E.Hlouchová K.Nature Ecology & Evolution. 2023; 7(4); 570-58010.1038/s41559-023-02010-2
Insights into the pathogenesis of primary hyperoxaluria type I from the structural dynamics of alanine:glyoxylate aminotransferase variants 2024 Laboratoř strukturní biologie a buněčné signalizace Vaňková P.Pacheco-Garcia J.Loginov D.Gomez-Mulas A.Kádek A.Martin-Garcia J.Salido E.Man P.Pey A.FEBS Letters. 2024; 598(4); 485-49910.1002/1873-3468.14800
Shotgun proteomic profiling of dormant; ‚nonculturable‘ Mycobacterium tuberculosis 2022 Laboratoř strukturní biologie a buněčné signalizace Nikitushkin V.Shleeva M.Loginov D.Dyčka F.Štěrba J.Kaprelyants A.PLoS ONE. 2022; 17(8 August); e026984710.1371/journal.pone.0269847
A single evolutionarily divergent mutation determines the different FAD-binding affinities of human and rat NQO1 due to site-specific phosphorylation 2022 Laboratoř strukturní biologie a buněčné signalizace Luis Pacheco-Garcia J.Loginov D.Rizzuti B.Vaňková P.Neira J.Kavan D.Mesa-Torres N.Guzzi R.Man P.Pey A.FEBS Letters. 2022; 596(1); 29-4110.1002/1873-3468.14238
Allosteric Communication in the Multifunctional and Redox NQO1 Protein Studied by Cavity-Making Mutations 2022 Laboratoř strukturní biologie a buněčné signalizace Pacheco-Garcia J.Loginov D.Anoz-Carbonell E.Vaňková P.Palomino-Morales R.Salido E.Man P.Medina M.Naganathan A.Pey A.Antioxidants. 2022; 11(6); 111010.3390/antiox11061110
Different phenotypic outcome due to site-specific phosphorylation in the cancer-associated NQO1 enzyme studied by phosphomimetic mutations 2022 Laboratoř strukturní biologie a buněčné signalizace Pacheco-Garcia J.Anoz-Carbonell E.Loginov D.Vaňková P.Salido E.Man P.Medina M.Palomino-Morales R.Pey A.Archives of Biochemistry and Biophysics. 2022; 729(OCT 30 2022); 10939210.1016/j.abb.2022.109392
Loss of stability and unfolding cooperativity in hPGK1 upon gradual structural perturbation of its N-terminal domain hydrophobic core 2022 Laboratoř strukturní biologie a buněčné signalizace Luis Pacheco-Garcia J.Loginov D.Naganathan A.Vaňková P.Cano-Munoz M.Man P.Pey A.Scientific Reports. 2022; 12(1); 1720010.1038/s41598-022-22088-1
Utilization of Fast Photochemical Oxidation of Proteins and Both Bottom-up and Top-down Mass Spectrometry for Structural Characterization of a Transcription Factor-dsDNA Complex 2022 Laboratoř strukturní biologie a buněčné signalizace Polák M.Yassaghi G.Kavan D.Filandr F.Fiala J.Kukačka Z.Halada P.Loginov D.Novák P.Analytical Chemistry. 2022; 94(7); 3203-321010.1021/acs.analchem.1c04746
Hydroxyl radical footprinting analysis of a human haptoglobin-hemoglobin complex 2022 Laboratoř strukturní biologie a buněčné signalizace Loginov D.Fiala J.Brechlin P.Kruppa G.Novák P.Biochimica Et Biophysica Acta-Proteins and Proteomics. 2022; 1870(2); 14073510.1016/j.bbapap.2021.140735
Relationship of Motility Activation to Lipid Composition; Protein Profile; and Swelling Rate of Burbot Lota lota Spermatozoon Following Change of Temperature and Osmolality 2021 Laboratoř strukturní biologie a buněčné signalizace Dadras H.Policar T.Loginov D.Boryshpolets S.Loginova Y.Sampels S.Sotnikov A.Kholodnyy V.Štěrba J.Xin M.Dzyuba B.Frontiers in marine science. 2021; 8(OCT 21 2021); 73608710.3389/fmars.2021.736087
Proteome Profiling of PMJ2-R and Primary Peritoneal Macrophages 2021 Laboratoř strukturní biologie a buněčné signalizace Rusanov A.Kozhin P.Tikhonova O.Zgoda V.Loginov D.Chlastáková A.Selinger M.Štěrba J.Grubhoffer L.Luzgina N.International Journal of Molecular Sciences. 2021; 22(12); 632310.3390/ijms22126323
Benefits of Ion Mobility Separation and Parallel Accumulation-Serial Fragmentation Technology on timsTOF Pro for the Needs of Fast Photochemical Oxidation of Protein Analysis 2021 Laboratoř strukturní biologie a buněčné signalizace Loginov D.Fiala J.Chmelík J.Brechlin P.Kruppa G.Novák P.ACS Omega. 2021; 6(15); 10352-1036110.1021/acsomega.1c00732