Variation of carbon; nitrogen and phosphorus content in fungi reflects their ecology and phylogeny 2024 Laboratoř environmentální mikrobiologiePánek M.Vlková T.Michalová T.Borovička J.Tedersoo L.Adamczyk B.Baldrian P.López Mondéjar R.Frontiers in Microbiology. 2024; 15(21 May); 137982510.3389/fmicb.2024.1379825
Investigating the Bacterial and Fungal Communities Involved in Dead Biomass Degradation in Forest Soils 2023 Laboratoř environmentální mikrobiologieŠtursová M.López Mondéjar R.Baldrian P.In: MARTIN; F.; UROZ; S.; eds. Microbial Environmental Genomics (MEG). New York: Humana; 2023; s. 157-168. Methods in Molecular Biology10.1007/978-1-0716-2871-3_8
Forest microbiome and global change 2023 Laboratoř environmentální mikrobiologieBaldrian P.López Mondéjar R.Kohout P.Nature Reviews. Microbiology. 2023; 21(8); 487-50110.1038/s41579-023-00876-4
Global Distribution of Carbohydrate Utilization Potential in the Prokaryotic Tree of Life 2022 Laboratoř environmentální mikrobiologieLópez Mondéjar R.Tláskal V.da Rocha U.Baldrian P.mSystems. 2022; 7(6); e00829-2210.1128/msystems.00829-22
Contrasting fertilization and phenological stages shape microbial-mediated phosphorus cycling in a maize agroecosystem 2024 Laboratoř environmentální mikrobiologieBarquero M.Garcia-Diaz C.Dobbler P.Jehmlich N.Moreno J.López Mondéjar R.Bastida F.Science of the Total Environment. 2024; 951(November 2024); 17557110.1016/j.scitotenv.2024.175571
Specific utilization of biopolymers of plant and fungal origin reveals the existence of substrate-specific guilds for bacteria in temperate forest soils 2022 Laboratoř environmentální mikrobiologieAlgora C.Odriozola Larranga I.Human Z.Awokunle Hollá S.Baldrian P.López Mondéjar R.Soil Biology and Biochemistry. 2022; 171(AUG 2022); 10869610.1016/j.soilbio.2022.108696
Bacterial community in soil and tree roots of Picea abies shows little response to clearcutting 2022 Laboratoř environmentální mikrobiologieMartinovič T.Kohout P.López Mondéjar R.Algora Gallardo C.Starke R.Tomšovský M.Baldrian P.FEMS Microbiology Ecology. 2022; 98(11); fiac11810.1093/femsec/fiac118
Microbial utilization of simple and complex carbon compounds in a temperate forest soil 2022 Laboratoř environmentální mikrobiologieMartinovič T.Mašínová T.López Mondéjar R.Jansa J.Štursová M.Starke R.Baldrian P.Soil Biology and Biochemistry. 2022; 173(October 2022); 10878610.1016/j.soilbio.2022.108786
Response of soil chemical properties; enzyme activities and microbial communities to biochar application and climate change in a Mediterranean agroecosystem 2022 Laboratoř environmentální mikrobiologieLuis Moreno J.Bastida F.Diaz-Lopez M.Li Y.Zhou Y.López Mondéjar R.Benavente-Ferraces I.Rojas R.Rey A.Carlos Garcia-Gil J.Plaza C.Geoderma. 2022; 407(FEB 1 2022); 11553610.1016/j.geoderma.2021.115536
Litter-inhabiting fungi show high level of specialization towards biopolymers composing plant and fungal biomass 2021 Laboratoř environmentální mikrobiologieAlgora Gallardo C.Baldrian P.López Mondéjar R.Biology and Fertility of Soils. 2021; 57(1); 77-8810.1007/s00374-020-01507-3
Structure and function of bacterial metaproteomes across biomes 2021 Laboratoř environmentální mikrobiologieBastida F.Jehmlich N.Starke R.Schallert K.Benndorf D.López Mondéjar R.Plaza C.Freixino Z.Ramirez-Ortuno C.Ruiz-Navarro A.Diaz-Lopez M.Vera A.Moreno J.Eldridge D.Garcia C.Delgado-Baquerizo M.Soil Biology and Biochemistry. 2021; 160(SEP 2021); 10833110.1016/j.soilbio.2021.108331
Metagenomes; metatranscriptomes and microbiomes of naturally decomposing deadwood 2021 Laboratoř environmentální mikrobiologieTláskal V.Brabcová V.Větrovský T.López Mondéjar R.Monteiro L.Saraiva J.da Rocha U.Baldrian P.Scientific Data. 2021; 8(1); 19810.1038/s41597-021-00987-8
Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition 2021 Laboratoř environmentální mikrobiologieTláskal V.Brabcová V.Větrovský T.Jomura M.López Mondéjar R.Monteiro L.Saraiva J.Human Z.Cajthaml T.da Rocha U.Baldrian P.mSystems. 2021; 6(1); e01078-2010.1128/mSystems.01078-20
Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach 2021 Laboratoř environmentální mikrobiologieStarke R.López Mondéjar R.Human Z.Navrátilová D.Štursová M.Větrovský T.Olson H.Orton D.Callister S.Lipton M.Howe A.McCue L.Pennacchio C.Grigoriev I.Baldrian P.Soil Biology and Biochemistry. 2021; 155(APR 2021); 10817010.1016/j.soilbio.2021.108170
Combined ozonation and solarization for the removal of pesticides from soil: Effects on soil microbial communities 2021 Laboratoř environmentální mikrobiologieDiaz-Lopez M.Nicolas E.López Mondéjar R.Galera L.Garrido I.Fenoll J.Bastida F.Science of the Total Environment. 2021; 758(MAR 1); 14395010.1016/j.scitotenv.2020.143950
Interactive impacts of boron and organic amendments in plant-soil microbial relationships 2021 Laboratoř environmentální mikrobiologieVera A.Moreno J.Siles J.López Mondéjar R.Zhou Y.Li Y.Garcia C.Nicolas E.Bastida F.Journal of Hazardous Materials. 2021; 408(APR 15); 12493910.1016/j.jhazmat.2020.124939
Microhabitat heterogeneity associated with Vanilla spp. and its influences on the microbial community of leaf litter and soil 2020 Laboratoř environmentální mikrobiologiede Oca-Vasquez G.Solano-Campos F.Azofeifa-Bolanos B.Paniagua-Vasquez A.Vega-Baudrit J.Ruiz-Navarro A.López Mondéjar R.Bastida F.Soil Ecology Letters. 2020; 2(3); 195-20810.1007/s42832-020-0041-7
Feeding on fungi: genomic and proteomic analysis of the enzymatic machinery of bacteria decomposing fungal biomass 2020 Laboratoř environmentální mikrobiologieStarke R.Morais D.Větrovský T.López Mondéjar R.Baldrian P.Brabcová V.Environmental Microbiology. 2020; 22(11); 4604-461910.1111/1462-2920.15183
Seasonal influences on bacterial community dynamics in Mediterranean pyrophytic ecosystems 2020 Laboratoř environmentální mikrobiologieMediavilla O.Geml J.Olaizola J.Baldrian P.López Mondéjar R.Oria-de-Rueda A.Martin-Pinto P.Forest Ecology and Management. 2020; 478(DEC 15); 11852010.1016/j.foreco.2020.118520
Organic amendments exacerbate the effects of silver nanoparticles on microbial biomass and community composition of a semiarid soil 2020 Laboratoř environmentální mikrobiologieMontes de Oca-Vasquez G.Solano-Campos F.Vega-Baudrit J.López Mondéjar R.Vera A.Moreno J.Bastida F.Science of the Total Environment. 2020; 744(NOV 20); 14091910.1016/j.scitotenv.2020.140919
Metagenomics and stable isotope probing reveal the complementary contribution of fungal and bacterial communities in the recycling of dead biomass in forest soil 2020 Laboratoř environmentální mikrobiologieLópez Mondéjar R.Tláskal V.Větrovský T.Štursová M.Toscan R.da Rocha U.Baldrian P.Soil Biology and Biochemistry. 2020; 148(SEP 2020); 10787510.1016/j.soilbio.2020.107875
GlobalFungi; a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies 2020 Laboratoř environmentální mikrobiologieVětrovský T.Morais D.Kohout P.Lepinay C.Algora C.Awokunle Hollá S.Bahnmann B.Bílohnědá K.Brabcová V.D'Alo F.Human Z.Jomura M.Kolařík M.Kvasničková J.Lladó S.López Mondéjar R.Martinovič T.Mašínová T.Mészárošová L.Michalčíková L.Michalová T.Mundra S.Navrátilová D.Odriozola Larranga I.Piche-Choquette S.Štursová M.Švec K.Tláskal V.Urbanová M.Vlk L.Voříšková J.Žifčáková L.Baldrian P.Scientific Data. 2020; 7(1); 22810.1038/s41597-020-0567-7
Environmentally relevant concentrations of silver nanoparticles diminish soil microbial biomass but do not alter enzyme activities or microbial diversity 2020 Laboratoř environmentální mikrobiologieMontes de Oca-Vasquez G.Solano-Campos F.Vega-Baudrit J.López Mondéjar R.Odriozola Larranga I.Vera A.Moreno J.Bastida F.Journal of Hazardous Materials. 2020; 391(JUN 5); 12222410.1016/j.jhazmat.2020.122224
A meta-analysis of global fungal distribution reveals climate-driven patterns 2019 Laboratoř environmentální mikrobiologieVětrovský T.Kohout P.Kopecký M.Macháč A.Man M.Bahnmann B.Brabcová V.Choi J.Mészárošová L.Human Z.Lepinay C.Lladó S.López Mondéjar R.Martinovič T.Mašínová T.Morais D.Navrátilová D.Odriozola Larranga I.Štursová M.Švec K.Tláskal V.Urbanová M.Wan J.Žifčáková L.Howe A.Ladau J.Peay K.Storch D.Wild J.Baldrian P.Nature Communications. 2019; 10(NOV 13); 514210.1038/s41467-019-13164-8
Lignocellulolytic systems of soil bacteria: A vast and diverse toolbox for biotechnological conversion processes 2019 Laboratoř environmentální mikrobiologieLópez Mondéjar R.Algora C.Baldrian P.Biotechnology Advances. 2019; 37(6-7); 10737410.1016/j.biotechadv.2019.03.013
Land use shapes the resistance of the soil microbial community and the C cycling response to drought in a semi-arid area 2019 Laboratoř environmentální mikrobiologieMoreno J.Torres I.Garcia C.López Mondéjar R.Bastida F.Science of the Total Environment. 2019; 648(JAN15); 1018-103010.1016/j.scitotenv.2018.08.214
When drought meets forest management: Effects on the soil microbial community of a Holm oak forest ecosystem 2019 Laboratoř environmentální mikrobiologieBastida F.López Mondéjar R.Baldrian P.Andrés-Abellán M.Jehmlich N.Torres I.Garcia C.López-Serrano F.Science of the Total Environment. 2019; 662(APR 20); 276-28610.1016/j.scitotenv.2019.01.233
