Mgr. Miroslav Kolařík, Ph.D.

Vedoucí vědecký pracovník

Publication

Dactylfungins and Tetralones: Bioactive Metabolites from a Nematode-Associated Laburnicola nematophila

Taxol is NOT produced sustainably by endophytic fungi ! – A case study for the damage that scientific papermills can cause for the scientific communities

Mycobiomes of two distinct clades of ambrosia gall midges (Diptera: Cecidomyiidae) are species-specific in larvae but similar in nutritive mycelia

Concentration-dependent effect of plant secondary metabolites on bacterial and fungal microbiomes in caterpillar guts

Terbinafine resistance in Trichophyton mentagrophytes and Trichophyton rubrum in the Czech Republic: A prospective multicentric study

Unraveling intragenomic polymorphisms in the high-quality genome of Hypoxylaceae: a comprehensive study of the rDNA cistron

Global consortium for the classification of fungi and fungus-like taxa

In search of lost ergots: phylogenetic re-evaluation of Claviceps species in Japan and their biogeographic patterns revealed

GlobalAMFungi: a global database of arbuscular mycorrhizal fungal occurrences from high-throughput sequencing metabarcoding studies

Taxonomic analysis reveals host preference of rare fungi in endophytes of Vitis vinifera from the Czech Republic

Fungal diversity notes 1611–1716: taxonomic and phylogenetic contributions on fungal genera and species emphasis in south China

Seasonal Shifts in Bacterial and Fungal Microbiomes of Leaves and Associated Leaf-Mining Larvae Reveal Persistence of Core Taxa Regardless of Diet

Proportions of taxa belonging to the gut core microbiome change throughout the life cycle and season of the bark beetle Ips typographus

Wild rodents harbour high diversity ofi Arthroderma/i

Microbiome specificity and fluxes between two distant plant taxa in Iberian forests

New insight into the bark beetle ips typographus bacteriome reveals unexplored diversity potentially beneficial to the host

Amesia hispanica sp. nov.; Producer of the Antifungal Class of Antibiotics Dactylfungins

Defining the relationship between phylogeny; clinical manifestation; and phenotype for Trichophyton mentagrophytes/interdigitale complex; a literature review and taxonomic recommendations

Cyphelloporia bialoviesensis (Fungi; Agaricales)-a new genus and species for a giant cyphelloid fungus from Bia?owie?a virgin forest in Poland

Taxonomy and phylogeny of Paramarasmius gen. nov. and Paramarasmius mesosporus; a worldwide distributed fungus with a strict ecological niche

Insight into the genomes of dominant yeast symbionts of European spruce bark beetle; Ips typographus

Geosmithia-widespread and abundant but long ignored bark beetle symbionts

Higher white-nose syndrome fungal isolate yields from UV-guided wing biopsies compared with skin swabs and optimal culture media

Characterization and microsatellite marker development for a common bark and ambrosia beetle associate; Geosmithia obscura

Consolidation of Chloridium: new classification into eight sections with 37 species and reinstatement of the genera Gongromeriza and Psilobotry

Taxonomy of Aspergillus series Versicolores: species reduction and lessons learned about intraspecific variability

Etiology of Foliar Blight of Indian Paintbrush (Castilleja tenuiflora) in Mexico

Surprising discovery of Sedecula pulvinata in Central Europe – is it really a species endemic to the western USA?

Pre-invasion assessment on African invasive grasses revealed five new species of ergot fungi; Claviceps section Pusillae

Neotypification of Claviceps humidiphila and recognition of C. bavariensis sp. nov.

The 168-year taxonomy of Claviceps in the light of variations: From three morphological species to four sections based on multigene phylogenies

A monograph of Aspergillus section Candidi

Piperazine-Modified Ketoconazole Derivatives Show Increased Activity against Fungal and Trypanosomatid Pathogens

Fungal Planet description sheets: 1383-1435

Fungi are more transient than bacteria in caterpillar gut microbiomes

A re-assessment of Taxomyces andreanae; the alleged taxol-producing fungus; using comparative genomics

Host-driven subspeciation in the hedgehog fungus; Trichophyton erinacei; an emerging cause of human dermatophytosis

NMR Structure elucidation of quambalarines

Geosmithia Species Associated With Bark Beetles From China; With the Description of Nine New Species

Preinvasion Assessment of Exotic Bark Beetle-Vectored Fungi to Detect Tree-Killing Pathogens

Fungal Endophytes of Vitis vinifera-Plant Growth Promoters or Potentially Toxinogenic Agents?

Towards consolidation of Gymnopilus taxonomy: the case of G. stabilis; G. sapineus; and G. penetrans

Phylogenetic reassessment; taxonomy; and biogeography of codinaea and similar fungi

Fungal Endophytes of Vitis vinifera-Plant Growth Promotion Factors

Polyporus tubaeformis (Basidiomycota; Polyporaceae) identity; ecology and distribution in the Czech Republic; Austria; Slovakia and Ukraine

Re-examination of species limits in Aspergillus section Flavipedes using advanced species delimitation methods and description of four new species

Discovery of New Trichophyton Members; T. persicum and T. spiraliforme spp. nov.; as a Cause of Highly Inflammatory Tinea Cases in Iran and Czechia

Mining Indole Alkaloid Synthesis Gene Clusters from Genomes of 53 Claviceps Strains Revealed Redundant Gene Copies and an Approximate Evolutionary Hourglass Model

Nucleotide composition bias of rDNA sequences as a source of phylogenetic artifacts in Basidiomycota-a case of a new lineage of a uredinicolous Ramularia-like anamorph with affinities to Ustilaginomycotina

An Outbreak of Trichophyton quinckeanum Zoonotic Infections in the Czech Republic Transmitted from Cats and Dogs

Taxonomic revision of the acidophilic genus Acidiella (Dothideomycetes; Capnodiales) with a description of new species from Poland

Revision of the genus Aciculosporium (Clavicipitaceae) with a description of a new species on wavyleaf basketgrass; and proline-containing cyclic dipeptide production by A. take

Delimitation and phylogeny of Dictyochaeta; and introduction of Achrochaeta and Tubulicolla; genera nova

Phylogeny; global biogeography and pleomorphism of Zanclospora

A New Perspective of Pseudomonas-Host Interactions: Distribution and Potential Ecological Functions of the Genus Pseudomonas within the Bark Beetle Holobiont

Geosmithia associated with hardwood-infesting bark and ambrosia beetles; with the description of three new species from Poland

Termites Are Associated with External Species-Specific Bacterial Communities

NMR Structure Elucidation of Naphthoquinones from Quambalaria cyanescens

Clinical and histopathological changes in rainbow trout Oncorhynchus mykiss experimentally infected with fungus Bradymyces oncorhynchi

Resolving the taxonomy of emerging zoonotic pathogens in the Trichophyton benhamiae complex

Novel Insights into the Effect of Pythium Strains on Rapeseed Metabolism

Caterpillar gut and host plant phylloplane mycobiomes differ: a new perspective on fungal involvement in insect guts

Bacteria Belonging to Pseudomonas typographisp. nov. from the Bark Beetle Ips typographus Have Genomic Potential to Aid in the Host Ecology

Termites host specific fungal communities that differ from those in their ambient environments

Fungal Planet description sheets: 1042-1111

Comparative eco-physiology revealed extensive enzymatic curtailment; lipases production and strong conidial resilience of the bat pathogenic fungus

GlobalFungi; a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

Intragenomic polymorphisms in the ITS region of high-quality genomes of the Hypoxylaceae (Xylariales; Ascomycota)

Increasing the species diversity in the Aspergillus section Nidulantes: Six novel species mainly from the indoor environment

Fungal metabolic profile dataset was not influenced by long-term in vitro preservation of strains

Kryptické druhy aspergilů – případ chronické kavitující plicní infekce vyvolané Aspergillus lentulus u pacienta po transplantaci srdce\n

Fungal Planet description sheets: 951–1041

Příspěvek k poznání mykobioty středoevropských suchých trávníků: Phaeoclavulina clavarioides a Phaeoclavulina roellinii (Gomphales)

Adaptive traits of bark and ambrosia beetle-associated fungi

Bark Beetle Population Dynamics in the Anthropocene: Challenges and Solutions

Phylogenetic study documents different speciation mechanisms within the Russula globispora lineage in boreal and arctic environments of the Northern Hemisphere

Geosmithia species in southeastern USA and their affinity to beetle vectors and tree hosts

Ergochromes: Heretofore Neglected Side of Ergot Toxicity

Developmental and Immune Role of a Novel Multiple Cysteine Cluster TLR From Eisenia andrei Earthworms

Butyriboletus regius and Butyriboletus fechtneri: typification of two well-known species

Tricholomopsis badinensis sp. nov. and T. sulphureoidestwo rare fungi of European old-growth forests

Taxonomic update of Clitocybula sensu lato with a new generic classification

Taxonomic revision of the biotechnologically important species Penicillium oxalicum with the description of two new species from acidic and saline soils