prof. RNDr. Petr Baldrian, Ph.D.

Vedoucí vědecký pracovník

Publication

Theme issue on the ecology of soil microorganisms

Fungal communities are passengers in community development of dune ecosystems; while bacteria are not

How to best detect threatened deadwood fungi Comparing metabarcoding and fruit body surveys

Effects of experimental canopy openness on wood-inhabiting fungal fruiting diversity across succession

Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations

Effect of plant communities on bacterial and fungal communities in a Central European grassland

Plant effects on microbiome composition are constrained by environmental conditions in a successional grassland

Variation of carbon; nitrogen and phosphorus content in fungi reflects their ecology and phylogeny

Dominant herbaceous plants contribute to the spatial heterogeneity of beech and riparian forest soils by influencing fungal and bacterial diversity

A cryptically diverse microbial community drives organic matter decomposition in forests

MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy

The spatial patterns of community composition; their environmental drivers and their spatial scale dependence vary markedly between fungal ecological guilds

Decomposition of Fomes fomentatius fruiting bodies –transition of healthy living fungus into a deca y ed bacteria-ric h ha bita t is primaril y dri v en by Arthropoda

Current trends; limitations and future research in the fungi?

Fototrofní mikroorganismy a houby

How genomics can help biodiversity conservation

Investigating the Bacterial and Fungal Communities Involved in Dead Biomass Degradation in Forest Soils

Global Fungal Diversity Estimated from High-Throughput Sequencing

Ambient and substrate energy influence decomposer diversity differentially across trophic levels

Continuous microhabitats as crossroads of fungal communities in a primeval temperate forest

GlobalAMFungi: a global database of arbuscular mycorrhizal fungal occurrences from high-throughput sequencing metabarcoding studies

Improved recovery and annotation of genes in metagenomes through the prediction of fungal introns

Impact of Wood Age on Termite Microbial Assemblages

Post-fire wood mulch negatively affects the moss biocrust cover and its positive effects on microbial diversity in a semi-arid Mediterranean forest

Defining a core microbial necrobiome associated with decomposing fungal necromass

Symbiotic status alters fungal eco-evolutionary offspring trajectories

Plant-soil feedbacks in a diverse grassland: Soil remembers; but not too much

Forest microbiome and global change

Recovery of 197 eukaryotic bins reveals major challenges for eukaryote genome reconstruction from terrestrial metagenomes

Climate-driven shifts in plant and fungal communities can lead to topsoil carbon loss in alpine ecosystems

Enhancing the structural diversity between forest patches-A concept and real-world experiment to study biodiversity; multifunctionality and forest resilience across spatial scales

Bacterial; but not fungal; communities show spatial heterogeneity in European beech (Fagus sylvatica L.) deadwood

Co-responses of bacterial and fungal communities to fire management treatments in Mediterranean pyrophytic ecosystems

Global Distribution of Carbohydrate Utilization Potential in the Prokaryotic Tree of Life

Soil fungal and bacterial community structure in monocultures of fourteen tree species of the temperate zone

Fungal communities in soils under global change

Closing the gap: examining the impact of source habitat proximity on plant and soil microbial communities in post-mining spoil heap succession

A global atlas of soil viruses reveals unexplored biodiversity and potential biogeochemical impacts

Phosphorus limitation promotes soil carbon storage in a boreal forest exposed to long-term nitrogen fertilization

Specific utilization of biopolymers of plant and fungal origin reveals the existence of substrate-specific guilds for bacteria in temperate forest soils

The invasive tree Piper aduncum alters soil microbiota and nutrient content in fallow land following small scale slash-and-burn farming in tropical lowland forest in Papua New Guinea

Thousands of small; novel genes predicted in global phage genomes

The effect of microbial diversity and biomass on microbial respiration in two soils along the soil chronosequence

Defending Earth’s terrestrial microbiome

Successional development of wood-inhabiting fungi associated with dominant tree species in a natural temperate floodplain forest

Bacterial community in soil and tree roots of Picea abies shows little response to clearcutting

The era of reference genomes in conservation genomics

Quantifying wood decomposition by insects and fungi using computed tomography scanning and machine learning

Moss biocrust accelerates the recovery and resilience of soil microbial communities in fire-affected semi-arid Mediterranean soils

Microbial phylogenetic relatedness links to distinct successional patterns of bacterial and fungal communities

Microbial utilization of simple and complex carbon compounds in a temperate forest soil

Snags; logs; stumps; and microclimate as tools optimizing deadwood enrichment for forest biodiversity

Factors Controlling Dead Wood Decomposition in an Old-Growth Temperate Forest in Central Europe

High-throughput sequencing view on the magnitude of global fungal diversity

Fungal Community Development in Decomposing Fine Deadwood Is Largely Affected by Microclimate

Soil compartments (bulk soil; litter; root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition

Composition and functioning of the soil microbiome in the highest altitudes of the Italian Alps and potential effects of climate change

Yeasts from temperate forests

Actinobacterial Strains as Genomic Candidates for Characterization of Genes Encoding Enzymes in Bioconversion of Lignocellulose

Functional soil mycobiome across ecosystems

Distribution of Soil Extracellular Enzymatic; Microbial; and Biological Functions in the C and N-Cycle Pathways Along a Forest Altitudinal Gradient

Temporal turnover of the soil microbiome composition is guild-specific

A genomic catalog of Earth’s microbiomes (November; 10.1038/s41587-020-0718-6; 2020)

Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay

Predictors of soil fungal biomass and community composition in temperate mountainous forests in Central Europe

Successional Development of Fungal Communities Associated with Decomposing Deadwood in a Natural Mixed Temperate Forest

Litter-inhabiting fungi show high level of specialization towards biopolymers composing plant and fungal biomass

Deadwood-Inhabiting Bacteria Show Adaptations to Changing Carbon and Nitrogen Availability During Decomposition

Metagenomes; metatranscriptomes and microbiomes of naturally decomposing deadwood

Ecological Divergence Within the Enterobacterial Genus Sodalis: From Insect Symbionts to Inhabitants of Decomposing Deadwood

The contribution of insects to global forest deadwood decomposition

Dynamics of soil bacterial and fungal communities during the secondary succession following swidden agriculture in lowland forests

Microbial activity in alpine soils under climate change

Forest Microhabitat Affects Succession of Fungal Communities on Decomposing Fine Tree Roots

Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition

Fungal Communities Are Important Determinants of Bacterial Community Composition in Deadwood

Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach

Termites Are Associated with External Species-Specific Bacterial Communities

Genome-Resolved Metagenomics Is Essential for Unlocking the Microbial Black Box of the Soil

Explorative Meta-Analysis of 417 Extant Archaeal Genomes to Predict Their Contribution to the Total Microbiome Functionality

Composition of soil bacterial and fungal communities in relation to vegetation composition and soil characteristics along an altitudinal gradient

Fungal diversity living in the root and sporophore of the endemic Korean fern Mankyua chejuense

Early successional ectomycorrhizal fungi are more likely to naturalize outside their native range than other ectomycorrhizal fungi

Biotické ohrožení památek zahradního umění: řasy; sinice a invazní rostliny. Kritický katalog k výstavě

Biotické ohrožení památek zahradního umění: řasy; sinice a invazní rostliny

FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

In vitro elucidation of suppression effects of composts to soil-borne pathogen Phytophthora nicotianaeon pepper plants using 16S amplicon sequencing and metaproteomics

Stand age affects fungal community composition in a Central European temperate forest

Feeding on fungi: genomic and proteomic analysis of the enzymatic machinery of bacteria decomposing fungal biomass

Production of Fungal Mycelia in a Temperate Coniferous Forest Shows Distinct Seasonal Patterns

Ligninolytic enzyme production and decolorization capacity of synthetic dyes by saprotrophic white rot; brown rot; and litter decomposing basidiomycetes

Seasonal influences on bacterial community dynamics in Mediterranean pyrophytic ecosystems

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Termites host specific fungal communities that differ from those in their ambient environments

Metagenomics and stable isotope probing reveal the complementary contribution of fungal and bacterial communities in the recycling of dead biomass in forest soil

Convergence; divergence or chaos? Consequences of tree trunk decay for pedogenesis and the soil microbiome in a temperate natural forest

Alien ectomycorrhizal plants differ in their ability to interact with co-introduced and native ectomycorrhizal fungi in novel sites

GlobalFungi; a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

Primary determinants of communities in deadwood vary among taxa but are regionally consistent

Long-term decomposition of litter in the montane forest and the definition of fungal traits in the successional space

Živá půda 3. Fototrofní mikroorganismy a houby

Insights from enzymatic degradation of cellulose and hemicellulose to fermentable sugars- a review

Explorative Meta-Analysis of 377 Extant Fungal Genomes Predicted a Total Mycobiome Functionality of 42.4 Million KEGG Functions

Evaluating the role of biotic and chemical components of plant-soil feedback of primary successional plants

Editorial: special issue on the ecology of soil microorganisms

A conceptual framework for understanding the biogeochemistry of dry riverbeds through the lens of soil science

Diversity of fungi and bacteria in species-rich grasslands increases with plant diversity in shoots but not in roots and soil

A meta-analysis of global fungal distribution reveals climate-driven patterns

Živá půda: biologie; ekologie; využívání a degradace půdy

The concept of operational taxonomic units revisited: genomes of bacteria that are regarded as closely related are often highly dissimilar

High-Throughput Sequencing Analysis of the Bacterial Community in Stone Fruit Phloem Tissues Infected by ´Candidatus Phytoplasma prunorum´

Rare and undersampled dimorphic basidiomycetes

Cellulase-Hemicellulase Activities and Bacterial Community Composition of Different Soils from Algerian Ecosystems

Mycobiome diversity: high-throughput sequencing and identification of fungi

Fungi associated with beetles dispersing from dead wood – Let’s take the beetle bus!

Adaptive traits of bark and ambrosia beetle-associated fungi

Effect of forest fire prevention treatments on bacterial communities associated with productive Boletus edulis sites

Changes in functional response of soil microbial community along chronosequence of spontaneous succession on post mining forest sites evaluated by biolog and SIR methods

Tracking of the activity of individual bacteria in temperate forest soils shows guild-specific responses to seasonality

The known and the unknown in soil microbial ecology

Lignocellulolytic systems of soil bacteria: A vast and diverse toolbox for biotechnological conversion processes

Bacteria from the endosphere and rhizosphere of Quercus spp. use mainly cell wall-associated enzymes to decompose organic matter

The effect of traditional slash-and-burn agriculture on soil organic matter; nutrient content; and microbiota in tropical ecosystems of Papua New Guinea

When drought meets forest management: Effects on the soil microbial community of a Holm oak forest ecosystem

Tree species identity alters decomposition of understory litter and associated microbial communities: a case study

Microbial communities in local and transplanted soils along a latitudinal gradient